species:   Artha
pid:       MI0019199
parent:    ath-MIR5628
paralog:   
locus:     5:17985850-17985995
matures:   ['GAAAUAGCGAAGAUAUGAUUA', 'AUCAUAUCUUCAUUAUUUUCA']
srr:       SRR9216049
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216049.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216049.cram 5:17985850-17985995

3 out of bounds
9 alignments
2 proper strand
2 stranded perfect matches

                             ************************                                        ************************                             
GGAACGGUCGAGAUGACUAACCGAUAUUAUAGAAAUAGCGAAGAUAUGAUUAUAGAAGAAUCAACCAUCUUUUGGUUUCUUCUUGAUUUUUCUAUAAUCAUAUCUUCAUUAUUUUCAUAAUAUUGGUUAAUCAUCUCGACCGUUCG
.(((((((((((((((.(((((((((((((.(((((((.((((((((((((((((((((((((((((.....)))).......)))))))))))))))))))))))).))))))).))))))))))))).))))))))))))))).
-------------------------------GAAAUAGCGAAGAUAUGAUUA---------------------------------------------------------------------------------------------- l=21 a=0 c
------------------------------------------------------------------------------------------------AUCAUAUCUUCAUUAUUUUCA----------------------------- l=21 a=0 c*
-------------------------------GAAAUAGCGAAGAUAUGAUUAU--------------------------------------------------------------------------------------------- l=22 a=1 ma
-----------------------------------------------------------------------------------------------AAUCAUAUCUUCAUUAUUUUCA----------------------------- l=22 a=0 ma*

-------------------------------GAAAUAGCGAAGAUAUGAUUAU--------------------------------------------------------------------------------------------- l=22 a=1 (ma)
-----------------------------------------------------------------CAUCUUUUGGUUUCUUCUUGAUU---------------------------------------------------------- l=23 a=1 

mb-01011
ax-1011011
ku-01
ss-110110011100
fn-001
